Scaffold Ga0119887_1000615

Overview

Basic Information

• Taxon OID: 3300013769
• Scaffold ID: Ga0119887_1000615
• Source Dataset Name: Sewage treatment plant microbial communities from Vermont, USA - Sand_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwich University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16080
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Sewage Treatment Plant → Sewage Treatment Plant Microbial Communities From Vermont, Usa

Source Dataset Sampling Location

• Location Name: USA: Vermont
• Coordinates
  • Lat. (^o): 43.727094
  • Long. (^o): -72.425964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075045	Metagenome / Metatranscriptome	119	Y
F089120	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119887_10006156	F075045	AGG	MNGDHFNATFSGHMYEGDHFPDGTNHGTTSMMIDHHSTSTTSGRYTGSGDAGTFNMSLSPMWNRPASLGSVAGVYTRTTSNGYTMTMTVGANGQIMASDSRGCLINGTVTVPDATHNMYGMAATVTSCGSLNGHYQGMGTLLDADAMTDWMIAMHPLEHGGHSRGGSMMGGSPMMGRNTVPTGQHNLFMFSMANGQNAIMDALAR*
Ga0119887_10006159	F089120	GGA	MTGLERFSTMRRVNRKTAAWCSGLLIIVQMVMGPIAHPMSGFAGAADCVHATVPGTPMADDDCGDCPPTQDESPGGSQQDHSSTHGHYKCACPCGHTPALSTVTFAVPKPVPPADVASEPKGPTFSPPLFDFLRPPN*