NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120155_1064109

Scaffold Ga0120155_1064109


Overview

Basic Information
Taxon OID3300013768 Open in IMG/M
Scaffold IDGa0120155_1064109 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A35_65cm_0M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011415Metagenome / Metatranscriptome291N
F033128Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0120155_10641091F011415N/AVVVLILGSIAVLGATGRLGDLRYLNIPLIRPWPPAGFYQNPFNPTDRGDIVNASEAAKVKSDLVADGQVELQAYRASDGGLLDGADTGNRLVKLRAALAQNHAAGVSEDFVNQLTTVRVGKLADPNDASVTTCVEEVGTSRITLTSTANGQIIRQYTIRFDDKFWMVSVGGRYLITDAEVQTEAVSS*
Ga0120155_10641092F033128GGAGGMRPHLVLRPAVAAFAAVLLLPSVATAEAPGNEGGTVDVGPVSNGPVVSQGSAGYDPNGITAAASTKPSGSGTTSTEPTYTYRPVPNNSVPAPGVQNNNGVVSNPNAAIPIPACPDGQTGYYVYDSNGNSLGIVCVPNPTNSLLPPTTPEIALADQASSRQPWPALTL
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