Scaffold Ga0120179_1004765

Overview

Basic Information

• Taxon OID: 3300013763
• Scaffold ID: Ga0120179_1004765
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3873
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F097015	Metagenome	104	Y
F097809	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120179_10047651	F097015	N/A	VRVTLRFVSGRPVRIAYNVFVGWSPVPARARPRHLRVQLEELLVRRAMDPSCLTTQPDCPASVETTQLGQIAAAPGEWALYVDVGGIWTHVRPLVLRVRDGQRVRLRQRFDLYVPRGRAWRLFAFARECDFGLPTFSSNDRAVYPCPRSGEFGHPTGDDRPGYLAVRGSLGRHRANASLEDSTCPPVNKSGCYRLTWRVTAVP*
Ga0120179_10047656	F097809	N/A	MSQGIVRTRTGDEVSPIAVEEESVKPRITAAAGLAVAIVAVSSSVLLLGGNSNAAVSHTCSATDRQFLGAAQLNMAALGSLSQDYLQGDAKADDVILQTDSAVASLRNTNPSDPSLSK