Scaffold Ga0120147_1030398

Overview

Basic Information

• Taxon OID: 3300013758
• Scaffold ID: Ga0120147_1030398
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A24_65cm_12M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1000
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017361	Metagenome / Metatranscriptome	241	Y
F069463	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120147_10303981	F069463	GAG	VVVNGPPPAVTIGASVPILTYGQATHISGTVSNAKPGETVTLWAQLYGQASPVQLATVLTTTNGVWDFVVKPTLLTTYEAHWKSLVSSKVSLAMRPNVLFSASKGMGFVKVKTNHSLQGRKVYVQRFTRFGQWVKMKRVILGRSSQRLFYLRLPRGAY
Ga0120147_10303983	F017361	N/A	LDEGAEKELSGAEVRAALRQGGDWESLVPPGVAGVLKGLERTAV*