Scaffold Ga0120127_10090821

Overview

Basic Information

• Taxon OID: 3300013503
• Scaffold ID: Ga0120127_10090821
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 672
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007187	Metagenome / Metatranscriptome	356	Y
F092170	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120127_100908212	F007187	GAG	MTILAEMLARDCTRGHCEVCHDSCVKPSLSEICLTTAELRGASLQQYLRTLDMLGLPGEVTLVWVAQLPV*
Ga0120127_100908213	F092170	GGAG	MDVDFALVGHQESWRAAADVLAVLRGPAHTPLPDDEIRDILPWIPPRAVCHIDVGSITGA