Scaffold Ga0177922_10917421

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10917421
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1231
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041081	Metagenome	160	N
F058800	Metagenome	134	Y
F069828	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_109174211	F069828	GGAGG	MKRAVVTMAFGTEWDKVLALTQPRIEDFAKRNEIDFILINRSVMDPKDYNKSLLANILVGRGYEQCIYIDCDCLVAKDCDDFANPKEEGNDGFIAFDEGDFLDRKEGMKKLAAQYGGTITPTYYFNFGVFAIRRKHVGLLSLPPLGTVPNHFGMQTWANIQAHLWDIPLSGLDPAYNCMTSVE
Ga0177922_109174213	F058800	N/A	MKLALSWLLYFLGDIISRTLLRTGLGYGLYKTLMLWSVELDDKFDVWKEVKPKRRKRK*
Ga0177922_109174214	F041081	N/A	GKNIVCVGSNKERSTKIMIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHCFAEVVNNVIMSKIEISTATEDIKNPSKDLLEKADDLLSIQATEDFDAGK*