Scaffold Ga0177922_10289288

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10289288
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2070
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013279	Metagenome / Metatranscriptome	272	Y
F023834	Metagenome	208	Y
F031792	Metagenome	181	Y
F066578	Metagenome / Metatranscriptome	126	Y
F093528	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_102892881	F066578	N/A	STPLGVFSFDLMDVPEPEWVTHWMPATTEFARSNKISKLVGYLPIEEAVQL*
Ga0177922_102892882	F013279	AGGCGG	MQYDYRCPDCNGEITIERSIHEDPREPSCFDCHIPMIRKWDSPGVTFKGKGFYSTGG*
Ga0177922_102892886	F023834	AGAAGG	MNKEYWQAKAELCRDLALIQIEDEDTEKEAGMNLMRMTYALSMVDAYSEGKGDNE*
Ga0177922_102892887	F031792	AGGCGG	MGYEPELNDPVFYEDEEEREIKCFLCSEPLDQDDVVWADCEGQWQVRGKEGNDTAWCVSCLPSEKEGESNE*
Ga0177922_102892888	F093528	AGG	MSEERSVTHVVTLVIQAGSKWNKIELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDVPDKAVNDVVKEIQEEAGE*