Scaffold Ga0177922_10286630

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10286630
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1578
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023041	Metagenome	211	Y
F061549	Metagenome	131	Y
F100663	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_102866301	F100663	N/A	YMDDEYDEMYDYNASFGVYPRSVSAHSASYDEKAYDFPDDEDGFVQPTPDDIACALTEADVETMEVWLDQMPAYTITTLLHCYTPEPLSYTHRDDLCVAEQGVYDMLMEGDASGLISSVTKSYGAVSIVAEVICYYLQWDMRTPVSIKPTLPALLT*
Ga0177922_102866302	F061549	AGGAG	MKYRVQVVMSYWQTVEVEADSSADAANKAYDEFDITKARVGEGQTYDTELIDKVKYVVRNHNHTVLGVFDNEHDAEKDAKEYRDQTGNPAYVDKEYGE*
Ga0177922_102866303	F023041	AGGAG	MNNPPYDTGKVKIGLTYVPPPPIPTPESDWIQGVLLGDKQGMDDLLLTTIQSLGLIAFIVIVMLITGGTSNA*