Scaffold Ga0177922_10119392

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10119392
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 739
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039139	Metagenome	164	N
F060908	Metagenome / Metatranscriptome	132	Y
F093847	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_101193921	F060908	N/A	SKNRIQIPKKYASYIGLKEKFVAHVTNLNGSYVISACPTPESKKYMVDKDGAIRFPVQKNEYKIMIADSVVVIL*
Ga0177922_101193922	F039139	N/A	MSMFLNSFEFTSEDIVSILRAHDTDITIHQIAEIHDVLDHDSIVRSALQYDDPDMQLKSALSKAEDLMIMDGLFITEPKRFHVDD*
Ga0177922_101193923	F093847	N/A	LTINLRKTFARVVYYIEQTNQGKSKETILKELELSEEDFQFLLNTMLSISKLKDNEATISSIQIKEEIFIGGIYLTVHNKDLISL*