Scaffold Ga0177922_10063678

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10063678
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2175
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024787	Metagenome	204	N
F027846	Metagenome / Metatranscriptome	193	N
F060861	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_100636783	F060861	GAG	MDYSQYEDAATLNKWFINNYPVGRIDLSIHSLDLDKGIVVFKGSVWRDLNDPFPAVTNYAKGERDQYPPHMRKWYLEDTATSCIARCLILVKGSNKTAPKESMIAATGWSIEPKAELDQDLLQVNPVAILTREVENLRELHCDGGVRMLYKAGISKTTNKPFAGYVCVCGQKCQPIWGIAKSDGTFVFKEPVNG*
Ga0177922_100636784	F024787	AGGA	MNYEIYGWLITICLFTLMALLLGVTWIVAVENGYDKGFKSGYKRGQADTKKPTLQVQRVRYTNHPSLREKQLVQDNDYLMDRVVSLWDRESK*
Ga0177922_100636785	F027846	AGG	LAIVKWDKISGAYVDDKRKHFVKASLIREYARKAMGATQVRGRLSAKMVEGYWLDKFKEAVKYEL*