NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0173609_10796342

Scaffold Ga0173609_10796342


Overview

Basic Information
Taxon OID3300013315 Open in IMG/M
Scaffold IDGa0173609_10796342 Open in IMG/M
Source Dataset NameSediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA - 1B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Davis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6724
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Alkalispirochaeta → Alkalispirochaeta odontotermitis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified → Sediment → Sediment Microbial Communities From Acid Mine Drainage (Amd) Holding Pond In Pittsburgh, Pa, Usa

Source Dataset Sampling Location
Location NamePittsburgh PA
CoordinatesLat. (o)40.4406Long. (o)-79.9959Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092937Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0173609_107963425F092937AGGVWLFLFVLMLGCANTEPYRVAVTMEPMVRNCTCLGYISEISDMGAPQITPKFTYDAQERVLRKADMMNATHLVWIGDYSFAATAMIYRCSN*

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