Scaffold Ga0173609_10350027

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0173609_10350027

Scaffold Ga0173609_10350027

Overview

Basic Information
Taxon OID	3300013315 Open in IMG/M
Scaffold ID	Ga0173609_10350027 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA - 1B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, Davis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1026
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified → Sediment → Sediment Microbial Communities From Acid Mine Drainage (Amd) Holding Pond In Pittsburgh, Pa, Usa

Source Dataset Sampling Location
Location Name	Pittsburgh PA
Coordinates	Lat. (^o)	40.4406	Long. (^o)	-79.9959	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023894	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0173609_103500273	F023894	AGGAG	MEHSSRLKGQLCWVLGLFVIGAAVMLFACSQEGGQPSDLSKKAPPSLGAIADVDGADDAKKEGKKAKAGAEQAPASSPAGSQPAQGAPKQ*

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