Scaffold Ga0163162_10688782

Overview

Basic Information

• Taxon OID: 3300013306
• Scaffold ID: Ga0163162_10688782
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1144
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008718	Metagenome	329	Y
F026116	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163162_106887821	F008718	AGGAG	MYKYRLTLLFILATFASLSIHAQEVEDTIKIKTRVVFLDALVKDKKTNLPISNLTTENFQVFDDGKPRDISYFTREGQARKPLALILILDLREDGAGRFLKRTEILKSMEDELAKLPPGDEVAIMAMDTNENEERFWLTEFTNDRAKIAAALSHVPALSVSHDDPPEGAVQAKHKTQDTTAQPEGKPDDIIETETLRGKNGATIIRKTHRDGSVNVTRTNKDGKMTIELGDVYDMAAAVKDATRKAGEMRPNSQVSVVWVSDGLAPIFYEDRDATEQVLIRDNVIFNSLTVEMRTLFKFLVPMAKPITG
Ga0163162_106887822	F026116	N/A	QTLSTKDAEQVYIFLKDAGDKFNVLVVTIEQRDATVVQVALSPKNLALLLKDPEGTGKAITQEATINDQE*