Scaffold Ga0157378_10007332

Overview

Basic Information

• Taxon OID: 3300013297
• Scaffold ID: Ga0157378_10007332
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9634
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008444	Metagenome	333	Y
F010880	Metagenome	298	Y
F014022	Metagenome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157378_100073323	F014022	N/A	LQRSLFGLTARAATTIGLPGLSSESNFPARLDENGDLFLDRSQVIALTKALPSWFTPETLELMHTRHADACDALVDATENAAGVAASLNDKDSELFEDLANKMALVLAYGILSKFVPDVLLRALADAGDVESPPFPEKSAGAELMQNTFALSQTCCALNYSPQRLQQEWPRVSPEVFQLVREFCHRQTGFGPLAWDAPGYEDPSYVVRLLHSAFAQVDSEQVSRRFSFSKRTRLVQSTSKVTKKIAALRRLLGLWLDFLERETWYVRRAFYVGMVPLLQQLAARYRQKTPAFQSADLLFLDLRELVSGIADPAVIRTRRHRYMENTDYLSLHGVDPCRLATMLGSS*
Ga0157378_100073324	F010880	N/A	MSYALKKGTASKLLLVYAIDATDLRSGKTGLNSAAPDSSAAYIREGEAQVRQISLVEGKLGAHRAGSFVEVDGKLLPGVYQFGVPDEMLAAGAETVTLMLKFPGAVIEPISIHLVAYDPQDADRLGMTALGPEGRRAALRGAFPRLTEKELGDALWKSRGLTT*
Ga0157378_100073325	F008444	AGGAGG	MPVQHAYTMKAGTKSKLLLVYATSPDSTSGKTGLAKNPSAGSAAYIREGDSAARQVPMVPGRVGEWGSGALAEVDPRLLPGVYQFGAPDEMVAEGCARAVLLIRFPDAVIKPVEIHLVAYDPQDSERMGVWSLAGHKRHEFLRQALPRFTEMELALGQEAEKELAAKLSSKKES*