Scaffold Ga0170791_11786651

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0170791_11786651

Scaffold Ga0170791_11786651

Overview

Basic Information
Taxon OID	3300013295 Open in IMG/M
Scaffold ID	Ga0170791_11786651 Open in IMG/M
Source Dataset Name	northern Canada Lakes metatranscriptome co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	566
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Quebec
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011569	Metagenome / Metatranscriptome	289	Y
F058787	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170791_117866511	F058787	AGGAG	MPVEVVGVKDVLKGLEFINEDMRQRIRNAIDPIMRGVSSKAKGFVASNTDVLSGWAKASGNPGTFPKYDATVVRAG
Ga0170791_117866512	F011569	N/A	GVEYAFELKYGAGISKVLRDHERQTEIYFLAYECLRRANVVVPVFGLEFIETLDTVEVLDEEKK*

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