NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120688_1012163

Scaffold Ga0120688_1012163


Overview

Basic Information
Taxon OID3300013293 Open in IMG/M
Scaffold IDGa0120688_1012163 Open in IMG/M
Source Dataset NameAquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterWeill Cornell Medical College
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)695
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Canal → Unclassified → Unclassified → Aquatic Canal → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Source Dataset Sampling Location
Location NameUSA:New York City
CoordinatesLat. (o)40.67Long. (o)-73.99Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005564Metagenome / Metatranscriptome396Y

Sequences

Protein IDFamilyRBSSequence
Ga0120688_10121631F005564N/AMKPSKQQVVTGTDMHKIIIGLLVIYFLGDPGMETIAWLGSMKNYVITAVIALATAPFIVS
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