Basic Information | |
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Taxon OID | 3300013286 Open in IMG/M |
Scaffold ID | Ga0136641_1004399 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5296 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (58.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Elizabeth Lake, Yosemite National Park, California, USA | |||||||
Coordinates | Lat. (o) | 37.8453 | Long. (o) | -119.3697 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002977 | Metagenome / Metatranscriptome | 516 | Y |
F018716 | Metagenome / Metatranscriptome | 233 | Y |
F019762 | Metagenome / Metatranscriptome | 228 | Y |
F026556 | Metagenome / Metatranscriptome | 197 | Y |
F026795 | Metagenome / Metatranscriptome | 196 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136641_10043991 | F002977 | AGGAG | MKTLELQVPAEGIMKTNDWGDSRVYRIACNCGDETHNHNVWVEADDHDIIVTVYTTVKSNFWSKTRWHAIWTLLTKGYVDTESTVCMTKQQALNYAETLKSAIEDVNM |
Ga0136641_100439911 | F026795 | GGAG | MVHLLSIKRKRKAIMAKNYKDYVYFENRPDVVKIFDDLEAFHDFCRLEMFPFDESHLYNRDSWVWRNFEKSRRPKKAYTGERKPYLGKNPRPYNNERISN* |
Ga0136641_10043993 | F018716 | AGG | MTDDTVTVVWDNQNGFWWNETCAMVVEVFGLPGDRYRSNPEHDYMSFIFKNQKDADLCRILLSERL* |
Ga0136641_10043995 | F026556 | GGAGG | MTSALIKLILGITLIVIAIAIGPILGIWALNTLFPILHIPFTWETWAAFALLLGGTSGLRFGTKK* |
Ga0136641_10043997 | F019762 | N/A | MMMELHESVAHTRKEMTVKESGGFRVRMVKHEVISPKGLFSLDLIQESLKDGDVVSSQTYNFFMTKDEMATLASALIA* |
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