Scaffold Ga0136641_1004399

Overview

Basic Information

• Taxon OID: 3300013286
• Scaffold ID: Ga0136641_1004399
• Source Dataset Name: Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5296
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Elizabeth Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.3697

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F018716	Metagenome / Metatranscriptome	233	Y
F019762	Metagenome / Metatranscriptome	228	Y
F026556	Metagenome / Metatranscriptome	197	Y
F026795	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136641_10043991	F002977	AGGAG	MKTLELQVPAEGIMKTNDWGDSRVYRIACNCGDETHNHNVWVEADDHDIIVTVYTTVKSNFWSKTRWHAIWTLLTKGYVDTESTVCMTKQQALNYAETLKSAIEDVNM
Ga0136641_100439911	F026795	GGAG	MVHLLSIKRKRKAIMAKNYKDYVYFENRPDVVKIFDDLEAFHDFCRLEMFPFDESHLYNRDSWVWRNFEKSRRPKKAYTGERKPYLGKNPRPYNNERISN*
Ga0136641_10043993	F018716	AGG	MTDDTVTVVWDNQNGFWWNETCAMVVEVFGLPGDRYRSNPEHDYMSFIFKNQKDADLCRILLSERL*
Ga0136641_10043995	F026556	GGAGG	MTSALIKLILGITLIVIAIAIGPILGIWALNTLFPILHIPFTWETWAAFALLLGGTSGLRFGTKK*
Ga0136641_10043997	F019762	N/A	MMMELHESVAHTRKEMTVKESGGFRVRMVKHEVISPKGLFSLDLIQESLKDGDVVSSQTYNFFMTKDEMATLASALIA*