Scaffold Ga0136641_1001238

Overview

Basic Information

• Taxon OID: 3300013286
• Scaffold ID: Ga0136641_1001238
• Source Dataset Name: Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10775
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Elizabeth Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.3697

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011665	Metagenome / Metatranscriptome	288	Y
F019762	Metagenome / Metatranscriptome	228	Y
F026556	Metagenome / Metatranscriptome	197	Y
F033308	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136641_100123810	F033308	AGGA	MTNAKQLTDELIYRMKTTDLNKFEIKREVGANWLPRGVVPFDLSAKNGIATFEVWAESIQDAEHQVSQFLEQDEHE*
Ga0136641_100123815	F011665	AGG	MQNQINTMPISQFAQILRAAELSQQKEVKMTIQQARLLNLALLEIQDKLIQDYETMYNAIKNSGNTDVIQVSMDGGAI*
Ga0136641_10012382	F019762	AGGAG	MELHESVSHTRKEITVKESEGFRVRMVKHEVISPKGLFSLDIIQENLKDGQVQDSQTYNFFMTQEELQSLAHGLTL*
Ga0136641_10012384	F026556	GGAGG	MTSALMKLILGIALVVIAIALGPILGIWALNTLFPILHIPLTWETWAAFAILLGGASGIRYKK*