Scaffold Ga0136642_1000152

Overview

Basic Information

• Taxon OID: 3300013285
• Scaffold ID: Ga0136642_1000152
• Source Dataset Name: Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41346
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (85.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Lower Cathedral Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.4233

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001937	Metagenome / Metatranscriptome	614	Y
F014940	Metagenome / Metatranscriptome	258	Y
F104341	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136642_10001524	F014940	AGGGGG	MALTDGRTAVYHLNRLAGTLIRDIPQYDFNGAANIWAFNVTGKRYSRGKDALNQIYAYRNSGKNYYYDTPGAFNALAGTFGLGENEAARRISS*
Ga0136642_100015256	F104341	N/A	MNKKILWKLLSIVRVWFQSFLAIEVALHLKDLINGKLLWQVCVASFVPVAIRWLTPNDEFPDERRI*
Ga0136642_100015257	F001937	AGGAG	MGNVDLATVIYSYFFVIITILAGIGIISKHTVQKYTEELKDKLNKIEYALYNDGQTGLINRVEELLENQQSIKIDVEILKAKTE*