Scaffold Ga0136642_1000021

Overview

Basic Information

• Taxon OID: 3300013285
• Scaffold ID: Ga0136642_1000021
• Source Dataset Name: Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102674
• Total Scaffold Genes: 109
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (75.23%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Lower Cathedral Lake, Yosemite National Park, California, USA
• Coordinates
  • Lat. (^o): 37.8453
  • Long. (^o): -119.4233

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002267	Metagenome / Metatranscriptome	576	Y
F002977	Metagenome / Metatranscriptome	516	Y
F015338	Metagenome / Metatranscriptome	255	Y
F026795	Metagenome / Metatranscriptome	196	Y
F032649	Metagenome / Metatranscriptome	179	Y
F033308	Metagenome	177	Y
F043407	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136642_1000021108	F002267	AGGA	MAGIMMHHASHTSGPAPVNLVYNLDAANYSAVPTNGSTVNGFTLTVANAGSSIAWNSANGGSFVKSNSTGTDVIYGGPNYVTAQSYSVFMAYKLSATSAGRLLNTQSEASKDWLMGAYNGHPYTFYPNYAVNLPSTGTDTVWHLDWATWDTTTSTGKLYTSTSVAPAAAAYSVTNAGGGGFNQLRLFSRAAASEVQTGNIAVVKVWNGALTLTQIQNEYTSYKTRFGY*
Ga0136642_100002130	F032649	GGAG	MDERIEKAFNVANYMATLSNQRKVALEEFNQKLLFYINGATFLITLELINFTKMSLDLGRNSDVPFLDINNLPVNIVDVTEFFTNITDQYFEALNEYSVKFNEIKSKRKISDIVEL*
Ga0136642_100002140	F015338	AGAAG	MSLKNGKPNPLNYFNLRRVDFACPHFKYTNLDRYNPGLIKKIDHWIISNLNNRYYIGQGIALDNTNTIVYNTHIGFESEKELSFFTIACPHLQQR*
Ga0136642_100002151	F033308	AGGA	MTNAKQLTDELIYRMKTTDLNKFEIKREVGPNWLPNGTIPFDISATKGIATFTIWAESIQDAEHQVSQFLERGEDEQN*
Ga0136642_100002152	F002977	AGGA	MKAQLPAEGILKHNDWGDSKVYRVTCECGNSEHEHNVWVEADDHEVSVTIYTTTKSNFWSKTRWYHIWTLLTKGYIDTESTVCLKSQGALNYAETLKSAIIDVEEFRKQQDDKR*
Ga0136642_100002162	F043407	N/A	VSVGYGNAVPPATPLIVGTVYTTNNTGSAGQFLTSTGNGTSWNNFAGDNILVAKNNPPELEVKGRMVINGRDLEERLNTIEKVLQIPERDVKLEKKHPKLKKLYDEYINALGKYRTFEAIKGDEDGTT*
Ga0136642_100002166	F026795	GGAG	MVHLLSIKNTRKAIMAKNYKDYAYFENRPDVVKIFDDLEAYHNFCRLEMFPFDESHLYNRESWAWRSFEKSRRPKRLDGSRERKPYQGKNPKYATVE*