Scaffold Ga0116817_1000855

Overview

Basic Information

• Taxon OID: 3300013252
• Scaffold ID: Ga0116817_1000855
• Source Dataset Name: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 11m_Station6_GOM_Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2418
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location

• Location Name: USA: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053965	Metagenome / Metatranscriptome	140	N
F077161	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116817_10008552	F053965	GGAGG	MGKLADAIKEYKTAPINSPAERAAKETILQITESQWWKDNVGREFKMPKKYDNKKQQAIFTEPQFVFIGNFIFGRHEFCERCRLYKGLLTYTNGQMLYAKPYIT*
Ga0116817_10008553	F077161	GGA	MRNLTLPEIQARFDRHAKLHRFEVDKLFEKIKHKPFTEMQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYCGILRDIVTEEIEHVQDSITKSDIKKAVSQSTFDFDKRLLTTLSHNMKQAHHVVGHYSTKFDNPYFRSRCLLTKQTDLIPGYGYQFYGDTWRMMKSTMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYIT