Scaffold Ga0172420_10450378

Overview

Basic Information

• Taxon OID: 3300013233
• Scaffold ID: Ga0172420_10450378
• Source Dataset Name: Combined Assembly of Gp0198154, Gp0198156, Gp0198157, Gp0198161
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Western Washington University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 963
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mat From Mariana Arc And Backarc, Pacific Ocean

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 12.916667
  • Long. (^o): 143.633333
  • Depth (m): 2931

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039667	Metagenome / Metatranscriptome	163	Y
F057990	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172420_104503782	F057990	GAG	MVQKAFTMLDKDCSGQVTIQDIIGIYDVSMNPEFIEGRKTKEEILGAFLNEFDGARGNNDGVITQAEFFDYYTDLSMSTPSDEYFVRMMESAW*
Ga0172420_104503783	F039667	N/A	AFYGVGLDVKVRELNLQFKLAIQSKGGVGLRSLKRIFQRMDFNGNKKLDASEFE*