Scaffold Ga0116832_1012894

Overview

Basic Information

• Taxon OID: 3300013231
• Scaffold ID: Ga0116832_1012894
• Source Dataset Name: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 5m_Station5_GOM_Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1107
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location

• Location Name: USA: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050275	Metagenome / Metatranscriptome	145	N
F082265	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116832_10128941	F082265	N/A	ITVMDDTGVHGDVKVRAYDDIVYITQDDEELDVEFVLEMNPAMWEELIAAIQSPEGFFRRVKSV*
Ga0116832_10128943	F050275	AGGA	MINNEDILVFDFDFDKSALLDFWNQNQDNTQPYSDRRFGRFVMNNWRILKDIELEYADTMCKHFDIDAIPKFYVLQANTILFPHTDQDTTCSINFLLSDGAAPVRFGDNEYYYRTALLNTTRTHSVDKSPKDRILFKLSIKDEGFDIVKQKIINTISRS*