Scaffold Ga0116832_1000942

Overview

Basic Information

• Taxon OID: 3300013231
• Scaffold ID: Ga0116832_1000942
• Source Dataset Name: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 5m_Station5_GOM_Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3162
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location

• Location Name: USA: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F029594	Metagenome	188	Y
F053632	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116832_10009423	F029594	GAGG	MLPDEMEAEKNRKIILAQADEIDILKRNVKDLQENLATCHKRIKELVDAT*
Ga0116832_10009424	F053632	GAG	MITDTEKHSLRLSDGIDGGVTMKLYKNSDGVWAGTQADARKMCGKGYQTVDVPTDKPSLLRFLNANKVGTSYTSNDKEFEPVYAPDTDLDKKALSYFEWGYDKLRSGEFADGTEFIRKALLYQKTHNIHEEDTNA*
Ga0116832_10009425	F006217	AGGAGG	MLEVLLAIAATQADDNAITKYCMSKFEHWTDRASCAQQLRHIERKLEVEALREFLKENPHYRYPGMALPNGKIKPLDVCWGYDRTYGTNKERKC*