NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172421_118102

Scaffold Ga0172421_118102


Overview

Basic Information
Taxon OID3300013212 Open in IMG/M
Scaffold IDGa0172421_118102 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Saiful Muluk Lake, Pakistan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBGI Tech Solutions Co., Ltd.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1413
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location
Location NameSaiful Muluk Lake, Naran, Pakistan
CoordinatesLat. (o)34.8762Long. (o)73.6934Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003786Metagenome / Metatranscriptome468N
F035763Metagenome / Metatranscriptome171N

Sequences

Protein IDFamilyRBSSequence
Ga0172421_1181021F035763N/AKAESLKTTKQSSRKQQHNNTVNNTINNTTDIGCESSISLPSSDAYIVNPFLRQSIHDALNTDSDPKENFASKEKVADRLPSETYLCFSAFASTYERLAGVTYPSDKGNYIMTAKDGANCKKLVTWLKKVSASEQAAEDMVTMFTTAAWQISDKWLKANFTISNIYSQANNIYTKFMYNNPMAKAKRQQEIIDKLVNEFTI*
Ga0172421_1181022F003786N/AMNLTQYKPHNQDEKSIIDSRPNRIANIDQKDAYRQVLNVVSALFPMHGIDGDITFYANISKEIIKTFTQIAANEIEIAFRLFAAQSLDLDDDVKFYGKANMHTIGKILNAYLLYRRKILAAHDNEIAALRHNANMEERARKTREDLYANFPTMLKEFKGKDFTTLPLYWYDMCVQFGMIDYQEGEKRALWEEAQALALKEPPESMDLMTIRSHAKVIEQGNLKRAAVIAQQLAVWRKVLNK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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