Scaffold Ga0172421_115550

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0172421_115550

Scaffold Ga0172421_115550

Overview

Basic Information
Taxon OID	3300013212 Open in IMG/M
Scaffold ID	Ga0172421_115550 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Saiful Muluk Lake, Pakistan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	BGI Tech Solutions Co., Ltd.
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2502
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location
Location Name	Saiful Muluk Lake, Naran, Pakistan
Coordinates	Lat. (^o)	34.8762	Long. (^o)	73.6934	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017294	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172421_1155505	F017294	GGAG	MRVMHLDKSGLGWSFKTACGRNMLRTPMSTNWSDFKQEPVQYRCIKCVTSKQFEVNTKMDARKVA*

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