Scaffold Ga0172421_106311

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0172421_106311

Scaffold Ga0172421_106311

Overview

Basic Information
Taxon OID	3300013212 Open in IMG/M
Scaffold ID	Ga0172421_106311 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Saiful Muluk Lake, Pakistan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	BGI Tech Solutions Co., Ltd.
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1589
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location
Location Name	Saiful Muluk Lake, Naran, Pakistan
Coordinates	Lat. (^o)	34.8762	Long. (^o)	73.6934	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007170	Metagenome / Metatranscriptome	356	N
F009888	Metagenome / Metatranscriptome	311	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172421_1063112	F007170	AGG	MAYEPAVIEQWIYETLSGDATLLGLLAPDNKPNGFQMGIYNTVAPQSDPISRRPVQVPYVVFSRAGAGGEDEDALCGARVFTFPNYRITVWDTESGAMSMARIQTIMSRIDTLLDNQSVTSTTPRLYVRRVSTDQTFALSDGGRTDYGVTAVYRCLTQQ*
Ga0172421_1063114	F009888	GAGG	MAVIFDLTEDPQQVVQASAWVGDWHSYVVRLVDELGSPIDITTGTLGITYTNIATGAAYTFAAGSVVLTKQYSAQGILSILNPAAYGTAAIIRITVSFTVSTTVRRFGPLEIEVLAP*

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