Scaffold Ga0172421_104286

Overview

Basic Information

• Taxon OID: 3300013212
• Scaffold ID: Ga0172421_104286
• Source Dataset Name: Freshwater microbial communities from Saiful Muluk Lake, Pakistan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: BGI Tech Solutions Co., Ltd.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80024
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (11.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location

• Location Name: Saiful Muluk Lake, Naran, Pakistan
• Coordinates
  • Lat. (^o): 34.8762
  • Long. (^o): 73.6934

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016325	Metagenome / Metatranscriptome	248	Y
F020365	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172421_10428627	F016325	N/A	MKIKIDKVDQNNFIGFVNRLKVIDTFIYFKIKDEVVQASAYLPQRDAVKHHRIPVSQVFQLEDGAINTSKELKIAFFDAGRLTDAFKQFEFGNIQAEIEFVENDEDFVATEFRIFNNELEIKLACSEPSLGYKDLTDAQIAGIFNIDAANYVFDMDYTATSKVRSLFGLDKEETFTISTNAEGVRMKGKTYNYLVTDSFQGTNPGNVTLFKKYLNLLDKEDYSANVMDNRVVLRSKDSETLLTIATCQTAE*
Ga0172421_10428656	F020365	N/A	MNFFSNFGKREALIYIIVALWVGMGLFGAFKEASFTDLSIYFGSLTAYAATYIWAESKKPSSKSSILKKGPNSRKEVMIYVIVILWAIAGCGAIYFKANLGELALYFVSLTGFVASWLAGEVYAPQDTINKNKD*