Scaffold Ga0172421_102143

Overview

Basic Information

• Taxon OID: 3300013212
• Scaffold ID: Ga0172421_102143
• Source Dataset Name: Freshwater microbial communities from Saiful Muluk Lake, Pakistan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: BGI Tech Solutions Co., Ltd.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1641
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location

• Location Name: Saiful Muluk Lake, Naran, Pakistan
• Coordinates
  • Lat. (^o): 34.8762
  • Long. (^o): 73.6934

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009808	Metagenome	312	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172421_1021433	F009808	N/A	MKKSFTNQQFEWLFADITSAMPKIIFVGIILTYLITAALNVYFLSLPLLLSIPASLMLQFGRFAIVFIDFLNPSDKRSPYPAKVAAAATIISLLELYFSIQGQTSGAAFYAMFIFIGTIICFGYFLEIQFIEKGIEAYGIGIKAPRKRNPIKAKQEPLTMPINVRSVQLSLAFMLVLSSTTINAQNNHFMAYNTVSFKKIGNKMLERSYYSEADEGFTVDTISYKLLSGIDLWDGYSRTTYNNTLFMTYGTQDFEYNDIVEMWIYKGKYYKYYDFLKYLTEYVKRNFLNKKIHDKVRRHRPGNATERLSSVRD*