NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172421_100421

Scaffold Ga0172421_100421


Overview

Basic Information
Taxon OID3300013212 Open in IMG/M
Scaffold IDGa0172421_100421 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Saiful Muluk Lake, Pakistan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBGI Tech Solutions Co., Ltd.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17232
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location
Location NameSaiful Muluk Lake, Naran, Pakistan
CoordinatesLat. (o)34.8762Long. (o)73.6934Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091589Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0172421_10042124F091589AGAAGGMANYQDAPLADAPQALTSVLGSRLPYSGVAESARAVGQGVSFGLLDELEAAVRTGAISGPEYERQRNLLREQQKQFGQDMPVIKTGLEIGGSLIAPLGMARQISRLAPAAQSAVIGETLLGQAGRGTAIGAATGAASGYGFAEQDAGSEALVGGIFGGVLGGSVPIVVDRAGSLIKSVLNSAGIGDQETAASKLLSSYLKKDNLTPLEAQQALDELRRIGVPNPVLADLGKSLNDLAYSAYVVQSGAKGGTESFLVNRMIDQPNDIVRGLVEKAGLAKNISGFEYLEALTKNQKQKATQAYPQAYSKDISAAPFRKFVDRDLFQNAYANAVKNADAEGRKLPPLEQIRNAQFVPTNILHEIKIGLDQVVDSNTDALTGKMTKYGVTVVKVKDEFNDLIKSLNDDYAKANAEFADSERIKKSFKLGEDYQKLDPKEAASKIKKLNDDEKEAFRLGVMADVNSRLGNFKGGDFSKQIFKSENQKLLLRNAFPDQASYTEFSQYVKGLGQQNITKQRVLGGSRTDENRAVRDEASLLGSVAEGVATGSPIGLLRAGGRALLSRAKGISSETSEALQNRLFSVDPIEQSAILAELNRRQMRPKTGLLTGAAAVGSATGILGD*
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Institute for Fundamental Biomedical Research
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