Scaffold Ga0116697_1002023

Overview

Basic Information

• Taxon OID: 3300013134
• Scaffold ID: Ga0116697_1002023
• Source Dataset Name: Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2900
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Beach Sand → Beach Sand Microbial Communities From Municipal Pensacola Beach, Florida

Source Dataset Sampling Location

• Location Name: USA: Municipal Pensacola Beach, FL
• Coordinates
  • Lat. (^o): 30.3262
  • Long. (^o): -87.1745

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070744	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116697_10020233	F070744	GGA	VTVPSNTDDDQLQQICNEIPASDWVRVKNAWRQHQHNDTPRYMRYIHATNEENKRLELFWQRLVAQDFITEEDALLLTENFFQELGGYSDEKAKDMRRKILSRAADRFR