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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013132 Open in IMG/M |
| Scaffold ID | Ga0172372_10158307 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1779 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
| Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000473 | Metagenome / Metatranscriptome | 1097 | Y |
| F000671 | Metagenome / Metatranscriptome | 945 | Y |
| F011938 | Metagenome / Metatranscriptome | 285 | Y |
| F013878 | Metagenome / Metatranscriptome | 267 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0172372_101583073 | F000671 | AGGAG | MEKILCYSCGKSKNKLDVKKSVLLPINLLVCETCISSRLEPRWVVILAGRSSGPDYVKEFIIKRRYIGNEITASELLI* |
| Ga0172372_101583074 | F011938 | GGAGG | VKEYYDTTHIVFIHSEQCHGTVEKLGAWASVVIYTKEGIEYNELMENEEFTIVDEIVFKHIEESN* |
| Ga0172372_101583075 | F000473 | GAG | MFIDKSAAKQAEHFKHGINQWTGEPNKPVFYTPEMKRAIHNIKKPSMFIMDVVMYPDFLALRLYEDNFLQFEGTKKEMVIDYVTRVKKLIESYGVRCELEGKPSERVL* |
| Ga0172372_101583077 | F013878 | N/A | MLNLTELGVEVFIKKAQDITPYWDNYNLVIWKKDINGFTNVKGMFRENSWGTAEIISVDSNGIWKLPTKHVRHFK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |