Scaffold Ga0172373_10005046

Overview

Basic Information

• Taxon OID: 3300013131
• Scaffold ID: Ga0172373_10005046
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 18282
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (80.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025215	Metagenome	202	Y
F036663	Metagenome / Metatranscriptome	169	N
F053803	Metagenome	140	N
F064418	Metagenome / Metatranscriptome	128	N
F095175	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172373_1000504612	F036663	N/A	MDTNKLLTLVGPDERSELVTKVRIALNVAGDDVLDAPLQEMLKGLQRRLNIPAVGCINIATLDALAVAPPEW*
Ga0172373_1000504618	F053803	GAG	MAVIELTEDEIMDSLRFIHRVRKNKKEYDVTDRKFDKNNSSYSVNLMGRLGEVACARFLGLPTDDTVTPSGDNGHDLQTVLGRSIQVKTSTLPQLIFNAPELFVSNLAVLVKFSGDKQLPHVDSLFDVIGWTTRENFLANHYLHDYGYGTRLVMDANQLQPIEVLVNEISRLH*
Ga0172373_1000504623	F095175	N/A	MTTIIGIQKNDHCIIAADSRTTTEKGRPYSHPIITKITKRGKYLIAGAGTTMPCDTIQHIWRPPALPPSIKDQYHFMITDVVPSMREALKANGWVADDKSEDYEFLFLIAVNGIIYEIDDTFSVFLRDDGVYGIGSGSSYAVGAVQQGATWRKALQIATKNDVYSAPPFIMHRQEKK*
Ga0172373_1000504632	F064418	AGAAGG	MMGKPRPTEIKLVAKLLDPDAENSEGAAELAVEIIEALDKSRTKRESFIVVARLADWVPVQAWGEFTTRLQAEKFFPNLSSPDTGGKGSIVRLENPDDLLKRIGVIK*
Ga0172373_1000504636	F025215	N/A	GDVIAEVYDYAAGALLMSLYGDGSTIRLKNVILWLEGADGEGAQSYDNTSTIIEERLRKVGAIQ*