Scaffold Ga0172364_10364550

Overview

Basic Information

• Taxon OID: 3300013129
• Scaffold ID: Ga0172364_10364550
• Source Dataset Name: Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 933
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province, Lake Kivu
• Coordinates
  • Lat. (^o): -2.05
  • Long. (^o): 29.2062
  • Depth (m): 388

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019766	Metagenome	227	N
F020114	Metagenome / Metatranscriptome	226	Y
F027061	Metagenome / Metatranscriptome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172364_103645503	F019766	GAGG	MTKAQKIMKSYDRKWVSMRNKNCYDRKYAIAHIIRETAHQVLPHNPNHPFTAWKQEMLQIADEIEALQ*
Ga0172364_103645504	F020114	GGAGG	MTTKPQTFKHISRAIDNHGVHHLDALDEFGRHWYATMQQREEPWLTYVRHWELRTH*
Ga0172364_103645505	F027061	N/A	MELSMRPKSGDRQKLIARVINEVADRLCTDLGELEDPVSVLREIANEVEAL*