Scaffold Ga0172366_10286508

Overview

Basic Information

• Taxon OID: 3300013128
• Scaffold ID: Ga0172366_10286508
• Source Dataset Name: Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1027
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province, Lake Kivu
• Coordinates
  • Lat. (^o): -2.05
  • Long. (^o): 29.2062
  • Depth (m): 388

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043476	Metagenome	156	N
F075872	Metagenome	118	N
F090574	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172366_102865081	F043476	N/A	PITERRQPMLTLPTNIDKADIDSFVNMITTQVFDGDIDPLAVHIRCKAVVKALEAIIERTEEVAKDAAAMHGKGEFAFAGARVVLREPRDVPDFSHDQVCVELTERLKARQELVKTAFRMATTAAIVDPETGEVVPVVPVKPSKTTLTVTFR*
Ga0172366_102865082	F090574	N/A	MSLEERVEAMIALSHNNMQLGKVVMVVGQLFENVPADVSARLYPIWAEAYRSALQDMQNAYNLGVTEERTKCIAMMSKLKPTNQ*
Ga0172366_102865083	F075872	N/A	MSIERQFNHYYNVPHNGGTIDIEVHIQYEATNWTEDSTGDIDILDAWISSFKYIKQDMTRPEPKPGEMVYERYPWHKAVMSNAEYKSAQAWLDQTPLDFFYDAAFE