Scaffold Ga0172366_10214058

Overview

Basic Information

• Taxon OID: 3300013128
• Scaffold ID: Ga0172366_10214058
• Source Dataset Name: Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1228
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province, Lake Kivu
• Coordinates
  • Lat. (^o): -2.05
  • Long. (^o): 29.2062
  • Depth (m): 388

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010817	Metagenome / Metatranscriptome	298	Y
F016772	Metagenome / Metatranscriptome	244	Y
F091423	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172366_102140581	F010817	AGG	LKKFASILVLNFLFIGCATITPNKIQDFTASYDSSTPSQYNQDNGGVIAVLENGAVITSSAKDRYNNLIKMYKVKFKKEKAIELVENSGVTPYKDRYGNDLFLIDNEHLVYFGVMNSWLKEKVPADNILDKTIDKINN*
Ga0172366_102140582	F091423	N/A	VTGLIAALIRAVAGVFDAINNVFGAKNAKDMKERQAAQKEVEHQSDIEKAVKEKNLEKIRKHISS*
Ga0172366_102140583	F016772	N/A	MNKLNLIAIALMGIFMVGCSTTNTSGDNQVGGTTAVENALPYIKPAVILACTVVLEQALSPEDRVEKAKMINNVATVVESLTVGQTPTPDQLQKALTDYLPVSKTHWAKYVVVIKDIYAAQFAQLDGNAALAIKVLNAIAAGCKDATEQYVE*