Scaffold Ga0172366_10074674

Overview

Basic Information

• Taxon OID: 3300013128
• Scaffold ID: Ga0172366_10074674
• Source Dataset Name: Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2306
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province, Lake Kivu
• Coordinates
  • Lat. (^o): -2.05
  • Long. (^o): 29.2062
  • Depth (m): 388

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038537	Metagenome	165	Y
F102093	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172366_100746743	F038537	AGG	VYFWRGLYPLLRRFCKEKNVSLNKVVNRAVEQFLGHADVEELKLRAELEVLLREEAELRRVSNAMLRSGSYLLGYVQRVLKEPGRPLSHLPDPQRPLKALNPKEERVFRKIATRREEIAEEIAVITEQLLHDVKPFRLKPDLQRRSWSCRHGRNTVEGGESKDAC*
Ga0172366_100746744	F102093	N/A	MKHGTSGVVAIPKAYRDYHNLACGTEVTVLYDSLLLIIPKNLEKLLHEKAALIDALLGQSAEAPKQ*