Basic Information | |
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Taxon OID | 3300013127 Open in IMG/M |
Scaffold ID | Ga0172365_10266861 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 1027 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Rwanda: Western Province, Lake Kivu | |||||||
Coordinates | Lat. (o) | -2.05 | Long. (o) | 29.2062 | Alt. (m) | Depth (m) | 388 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004722 | Metagenome | 426 | Y |
F006109 | Metagenome | 381 | Y |
F022403 | Metagenome / Metatranscriptome | 214 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0172365_102668612 | F004722 | N/A | MSRSRTGRELVMEWLMREVRQAKTADLHRMAALLERARQIRGGSRQKRDGARFAQSNSWRKKVDDDVRWGV* |
Ga0172365_102668613 | F022403 | AGGAG | MPLQHGSKIYCQLLLDSNRYRLAEKLAASEGKRVTGLLREMVYTALEKALPASDYKAAEAADKAAWAESVQRRVQGRMRSKQEETGSGQDA* |
Ga0172365_102668614 | F006109 | N/A | MVGDLWVTALYGPGNGIGYTASKEDASSWVTYEKAVAAAKTVALWTDNLVAVHSIE |
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