Basic Information | |
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Taxon OID | 3300013126 Open in IMG/M |
Scaffold ID | Ga0172367_10088268 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 2226 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000473 | Metagenome / Metatranscriptome | 1097 | Y |
F000671 | Metagenome / Metatranscriptome | 945 | Y |
F011938 | Metagenome / Metatranscriptome | 285 | Y |
F013878 | Metagenome / Metatranscriptome | 267 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0172367_100882682 | F013878 | AGG | MLNLTELGVEVFIKRAENVTPFWDNYDLVIWKKDINGFTNIKGMFKENAWGTAERISVDSNGIWKLPTKHVKHFK* |
Ga0172367_100882684 | F000473 | GAGG | MFINKKDINEHFKYGINEWTGEPNKPVFYTEEMRKAVHQIKKPSMLLMDIVMYPQFLALRLYEDNFLQFEGAKKEMVIDYVGKVKRLLESYGVRCELEGKPSERIL* |
Ga0172367_100882685 | F011938 | GGAGG | VKEYYDIVLIVFIHSEQCHGTVEKLGAWASMVKYNKDGMEYNELMENEEFSIIDEIVFKHVEESE* |
Ga0172367_100882686 | F000671 | GAGG | MEKILCYSCNKSKNKLDVKKSSLLPINLFICETCSSSKFEPRWVIILAGRSQGPDHVKEFIVKKRYVGNEISASELLV* |
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