Scaffold Ga0172367_10073231

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10073231
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2544
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014593	Metagenome / Metatranscriptome	261	Y
F026002	Metagenome	199	N
F036229	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_100732314	F026002	N/A	MEQKFKLEFPLDLEIKYDDPEELLELASKEEFVTFMFRNAIAAIKQAIRKNKSECVIFSIQNYNVRVAIKKEHYKTFLNKAIKHYEALEEYSKCSELVNLKSRL*
Ga0172367_100732315	F036229	N/A	MTIYCYYYVKNDPSQEKLGKILTGSRLEAAKEFAGQKQLPLKTFLSIWSVGKKKVF*
Ga0172367_100732316	F014593	N/A	MDPKKDFKKFFQKMFDTPVDIQGEILTPEERTRKNFVTFVDNYKKAVLRSQEVQEKFGLDLWNWEDLFAKSLEGLIYYTFDEEVAEVILWYIYEHSLAEDQEDKIVNFGDDQFI