Basic Information | |
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Taxon OID | 3300013126 Open in IMG/M |
Scaffold ID | Ga0172367_10031735 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 4590 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (56.25%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004546 | Metagenome / Metatranscriptome | 433 | Y |
F020347 | Metagenome / Metatranscriptome | 224 | Y |
F085168 | Metagenome | 111 | Y |
F102570 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0172367_1003173511 | F085168 | AGG | MWRSIRILLWQIVSDWEHRLYPYEKEDRNDYYYTVKNEDTGESYMIIEWIKSFDERIQRLQDEMLYVQSEIRSLKK* |
Ga0172367_1003173512 | F102570 | GGAG | MMIRKFIDWFFSPSIKPLVEDHLVIDEFYQRFVDLEQRVKVLEEENVGTTNELYRMENSLDARIDILAEHCRINTDV* |
Ga0172367_100317352 | F020347 | GGA | MSSKTYLQYVAIPALAFFFSAIISYNLTPERTPQHNSTVSGSSGDLVCTSSCVVKEK* |
Ga0172367_100317357 | F004546 | GAG | MDHTEEFPFDQFPWKLVYKDGNETHKCYFDSEHNRQKHIDRYKLKKKEIKLTHKNQDYGD |
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