NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0172367_10001152

Scaffold Ga0172367_10001152


Overview

Basic Information
Taxon OID3300013126 Open in IMG/M
Scaffold IDGa0172367_10001152 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)39577
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (72.73%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameDemocratic Republic of the Congo: South-Kivu
CoordinatesLat. (o)-1.64Long. (o)29.05Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023292Metagenome210Y
F038087Metagenome166Y
F049426Metagenome146Y
F051701Metagenome143Y
F066456Metagenome126Y
F066489Metagenome126Y
F096871Metagenome104Y
F100665Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0172367_1000115213F038087AGGAMSNKTTIILSINSDIVSRFLFDDYINACNDAGMVVRYEPYTRDMYAELNAKALDIEKQDALASLEEEILNNVACVNGNCED*
Ga0172367_1000115215F051701AGGAGMQVQIKLTDEQVDDILVEGLKSGYEINKTFPDEPNYYEIDQAFKTLLAYYMGDKNYAKYAHDRAKVNKTYNAKRLADAHNGL*
Ga0172367_1000115216F066489N/AMLIMVCSGCVSLATSVATQTTVQVVGEQYLIAQNKPIIRCNLFNVAKGNKMCRVYKQYRRA*
Ga0172367_1000115224F066456AGGAGGMGFHINVYNMPRIETYDRAKEDFNSRTVVRGESQSIRRLGDRYEKEKWIRKDIIDGIEVYVAGYYDTDLVRFYPTHKEITLGSYPSQSTEYFVWYISGHSLRDFEHKYYVPSPFTRSPMVKNHQIECEVWIGGDTYYMNARDWYAISYDNKALYPEQFEKPVKYKFDAKQMRELRLPYKKLLKYADTMLKLTNGEGVENDAELNKQSEEYRLPEYSKNLLPLCADEDKTNLAYYNVLRQCQHIKWLGNYPNHKESSYCNIGIFKRYLDKHIKLENPQVLVEVN*
Ga0172367_1000115235F096871N/AMWVFQLALISGVMVGLELKFLEEDAPYVFSLVLDLFIIRLVIQKLKYVR*
Ga0172367_1000115238F100665GAGGMAKPYIKVVSIKDTKQGDCKLTLDMNQAGREVILQAGIQKALSDYTVENSKKLSFWNKLQICWSILR*
Ga0172367_100011528F049426AGGAGMKTKPIFKSWREYDREIYMSEYVTIPKSRYRRLIVSEVVSWGISIFLLLVMVLR*
Ga0172367_100011529F023292N/AMNIDQVKEYVATQLKSYRVKDILDKFDDSEWLAMYEQIAKVKPWEVERRLIDWARHELEFFRYVLYKERHYEDLLFDKACLECLKCTDECETERKYYVRKPRS*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.