Basic Information | |
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Taxon OID | 3300013126 Open in IMG/M |
Scaffold ID | Ga0172367_10001152 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 39577 |
Total Scaffold Genes | 55 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (72.73%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F023292 | Metagenome | 210 | Y |
F038087 | Metagenome | 166 | Y |
F049426 | Metagenome | 146 | Y |
F051701 | Metagenome | 143 | Y |
F066456 | Metagenome | 126 | Y |
F066489 | Metagenome | 126 | Y |
F096871 | Metagenome | 104 | Y |
F100665 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0172367_1000115213 | F038087 | AGGA | MSNKTTIILSINSDIVSRFLFDDYINACNDAGMVVRYEPYTRDMYAELNAKALDIEKQDALASLEEEILNNVACVNGNCED* |
Ga0172367_1000115215 | F051701 | AGGAG | MQVQIKLTDEQVDDILVEGLKSGYEINKTFPDEPNYYEIDQAFKTLLAYYMGDKNYAKYAHDRAKVNKTYNAKRLADAHNGL* |
Ga0172367_1000115216 | F066489 | N/A | MLIMVCSGCVSLATSVATQTTVQVVGEQYLIAQNKPIIRCNLFNVAKGNKMCRVYKQYRRA* |
Ga0172367_1000115224 | F066456 | AGGAGG | MGFHINVYNMPRIETYDRAKEDFNSRTVVRGESQSIRRLGDRYEKEKWIRKDIIDGIEVYVAGYYDTDLVRFYPTHKEITLGSYPSQSTEYFVWYISGHSLRDFEHKYYVPSPFTRSPMVKNHQIECEVWIGGDTYYMNARDWYAISYDNKALYPEQFEKPVKYKFDAKQMRELRLPYKKLLKYADTMLKLTNGEGVENDAELNKQSEEYRLPEYSKNLLPLCADEDKTNLAYYNVLRQCQHIKWLGNYPNHKESSYCNIGIFKRYLDKHIKLENPQVLVEVN* |
Ga0172367_1000115235 | F096871 | N/A | MWVFQLALISGVMVGLELKFLEEDAPYVFSLVLDLFIIRLVIQKLKYVR* |
Ga0172367_1000115238 | F100665 | GAGG | MAKPYIKVVSIKDTKQGDCKLTLDMNQAGREVILQAGIQKALSDYTVENSKKLSFWNKLQICWSILR* |
Ga0172367_100011528 | F049426 | AGGAG | MKTKPIFKSWREYDREIYMSEYVTIPKSRYRRLIVSEVVSWGISIFLLLVMVLR* |
Ga0172367_100011529 | F023292 | N/A | MNIDQVKEYVATQLKSYRVKDILDKFDDSEWLAMYEQIAKVKPWEVERRLIDWARHELEFFRYVLYKERHYEDLLFDKACLECLKCTDECETERKYYVRKPRS* |
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