NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172367_10000864

Scaffold Ga0172367_10000864


Overview

Basic Information
Taxon OID3300013126 Open in IMG/M
Scaffold IDGa0172367_10000864 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)45569
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (18.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameDemocratic Republic of the Congo: South-Kivu
CoordinatesLat. (o)-1.64Long. (o)29.05Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004093Metagenome453Y
F021755Metagenome / Metatranscriptome217Y
F026863Metagenome / Metatranscriptome196Y
F028487Metagenome191Y
F039601Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0172367_1000086411F021755AGAAGMKRVILKLHDKKYADLVDHKVRECIKKNENYDIEYKGKMMTLSPEDLKTKCVGRKYIERPKYGEQPYHLLSYLWEPTKMKSNGE*
Ga0172367_1000086431F004093GAGLNPFDVETPLGYGVALFIIAGSIHSNPQFIVRLYHSGIVRTIDQNDIKIYGNPTAGEKLKPQ*
Ga0172367_1000086450F026863N/AMENKEVKIHKIPLDRLIDTLVELYNRGVDYIDIHGVPGEDFDKMAIVFTREYMTEQGVKNFEGLEEDMDLEIKPHKLTDDDLNILLN*
Ga0172367_1000086462F039601N/AMLSPRLTDCVYDASIPATLLEIDEKLAYWANRQYNNIVFSVNNYIPGDVIDDLLHYKQILTYRLCNPTYAMICGLPTTSQVVSRVKVLIHK*
Ga0172367_100008647F028487N/AMFNSEILDHLIAKYGIDDVIKFCEMESEKNALLADDFERNKTKKSEPSEFSHDRDWWAAANKQLKRRI*
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