Scaffold Ga0172367_10000519

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10000519
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 59525
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (63.37%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002052	Metagenome / Metatranscriptome	599	Y
F010749	Metagenome / Metatranscriptome	299	Y
F011759	Metagenome / Metatranscriptome	287	Y
F020159	Metagenome / Metatranscriptome	225	Y
F027841	Metagenome	193	Y
F057139	Metagenome	136	Y
F098748	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1000051925	F020159	AGGAG	MELLIAFVVGLVVMDFMWAWRLGIPQALWYRWKTRNDPKPESFEEQL*
Ga0172367_1000051933	F010749	GGA	VPKKFTFWRNCIVAETFEVVAESEEEARDLVRDENPVREEWVDWLSDDYELENIEELDPLYRMVKDYGSV*
Ga0172367_1000051937	F057139	N/A	VRIVKLTRNYNGYGVFTHRIEFLGGPRQNRVQQWISVRNWLWSQFGPSAEQFLARPELFDGVQPQWAWDSDKSAIYLRDQALVMFQLKKEFWENEENL*
Ga0172367_1000051938	F002052	AGGAG	MKKTFNFRFEVICADAGDTDHDRVEQLIDLAMQDLIYDDEFISAVGEKQALTIRVSRLDERMVDNSIE*
Ga0172367_100005195	F098748	AGG	MVRMEQLQALSTCGRPWAEQRAQMALAIMEQYQGGGLDESEYQELMRDLIRSDRLNEEADDIDIKNILVSCIMIGAKLA*
Ga0172367_1000051968	F027841	AGGAG	MPKKRPEPEIVYEDLKDNEEFISRDDIDIEVMSTTDDEPAVYVKFTGFDDAEDAEDYANFLAETLPLLLFESTRLQ*
Ga0172367_1000051998	F011759	GGAGG	MKEDLIADLWSVIVEHIPEKQRALVASDFINTLMDYGIKESTLDSLLGVDPYLDNAIEYVIDGDDISNDEDYYEDED*