Scaffold Ga0172374_1005347

Overview

Basic Information

• Taxon OID: 3300013122
• Scaffold ID: Ga0172374_1005347
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10.3m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 7293
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034814	Metagenome	173	Y
F081864	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172374_100534713	F081864	AGGAG	MEVDTTQYQASNGKPPYGVGQWRFRLGNETLSIFGKYSVAKMDAFRVAKKRAIERVVVLPDKKLAPQGGNPERPENMNQEQINNIKNRLMAQAESRTFGKGTKGERVRTVIPTNGLKAAEIMAIFQVDSKRTAHCIAKRGFYIVDYQKQSMCSGEIDVEEAYRIAKWWVYKKMGGRLPYWAEPEDMIQEAVTRLIERGGDPRMAGDSYKFSMVQTAIHRYLVRNGKHVHEDEEKGDCQGYKGKTWSRSYQPTETMCRMIEARGAYPLERAA*
Ga0172374_10053475	F034814	AGGA	MTSLTGEKIETLPGLHSCFTCADNLGCNLEPRCESMAGCIKWRCRVCLAPWWAVGYDHERCNATGVPNGVTYHGGIHMSPLPEASGHYYTHGGIYCEIHKSWRCGLERPDADQ*