Scaffold Ga0171652_1005997

Overview

Basic Information

• Taxon OID: 3300013110
• Scaffold ID: Ga0171652_1005997
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4941
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 234

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090233	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0171652_10059971	F090233	N/A	SKFRHGVFGMTHLSMRNLLDNRRVVNNLEIDIHFRHHADNGEAMIHENEFRSRPRKFRVIIDPYKVRVDDYGRELEDEEHANEMFKVLGHELVHVKQYVVGDLAMKAKGMYWKGELTDVKSMKDYFKSPWEVEAYGLERYLWLNFIDFWTSEIENNDLFKDCLD*