Scaffold Ga0164318_10186548

Overview

Basic Information

• Taxon OID: 3300013103
• Scaffold ID: Ga0164318_10186548
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1879
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium TMED67 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0183
  • Long. (^o): -111.3802
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008424	Metagenome / Metatranscriptome	333	Y
F015742	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164318_101865481	F015742	N/A	MNTKKAYELEKEEIVDRESAYLCTELERTLDRIVNYTDPLDEAMFNKIKA
Ga0164318_101865483	F008424	N/A	METKINKYERALYLFIVCGICFFCGVFYTYYKIDQRLWNEEILKARDIETRYLNYPTKRNYKKDDLERIIYGN*