Scaffold Ga0164315_10628188

Overview

Basic Information

• Taxon OID: 3300013099
• Scaffold ID: Ga0164315_10628188
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay6, Core 4569-2, 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 864
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0151
  • Long. (^o): -111.3798
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F004850	Metagenome / Metatranscriptome	421	Y
F077194	Metagenome / Metatranscriptome	117	Y
F086293	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164315_106281881	F001740	N/A	MYNSNNPSNWSWSKAFAEMDKTVHEAEMTQQCINHVLNYPGEANGVWMSLNKTQQDDVYELLNQII*
Ga0164315_106281882	F077194	N/A	MKQTLTVLEFSTGEVHQYHDVNYEKYEMELDEFISVQLGYNLNEVEYMFHEDSTVYNLTNELITK*
Ga0164315_106281883	F004850	N/A	MIDNYEFEIYYGDIEEPLYLTNDKNYICDEMRDFMEELGIVMDEVIYKVEKI*
Ga0164315_106281884	F086293	AGTAG	MNKLIIAGMVASGLLGYNIKEDGTRVEKALENVQYVKSWVLEDLNSGVMDSVYAEYYINTLNETEKLLTN*