Basic Information | |
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Taxon OID | 3300013098 Open in IMG/M |
Scaffold ID | Ga0164320_10013836 Open in IMG/M |
Source Dataset Name | Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3083 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (8.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Mexico: Gulf of California | |||||||
Coordinates | Lat. (o) | 27.009 | Long. (o) | -111.4081 | Alt. (m) | Depth (m) | 2000 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000352 | Metagenome / Metatranscriptome | 1247 | Y |
F005454 | Metagenome / Metatranscriptome | 400 | Y |
F036489 | Metagenome / Metatranscriptome | 170 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0164320_1001383612 | F000352 | N/A | MKNIKLTESDCTFVHYVLRMYATQTPGLDQEDKEEIREVAAKFK* |
Ga0164320_100138365 | F005454 | N/A | MRIIKHYNPHFPERETYKCTIRYTTKFGTLDEVTQWRDDQLENEDYYKSLEELSRKAAGEFYKTLNYKGD* |
Ga0164320_100138368 | F036489 | N/A | MKNNLRNVVFTTMIGLCTFQIGVIWKQNQVNQVNEWRESIVESYILRTDNGTMLGYNINILDDERLFTYED* |
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