Scaffold Ga0164296_1027912

Overview

Basic Information

• Taxon OID: 3300013093
• Scaffold ID: Ga0164296_1027912
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3230
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021463	Metagenome	218	Y
F075594	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_10279122	F075594	N/A	LDINMSSTFTVSRDQIIQLALRKLGVLELGDVPDSATIANASLALNLLVKQFATEGLKLWKVNKLVLPLVQNQTVYSIGPASQNPLTDLDTDKPLKVIQGWIRNTSVSPMIDTPIQMLSQQEYNVLGSKFSTGISNSMYYNVRKNSGNMYVYLTPDANTSQDYELHFMAQQPMDDINTGSQIPDFPNEWMNTLVWGLADQLAIEYGVIDSRRQEIAGRAGAYRDRLNDWDVEVTSSFFQPDLRMANVIFGQAN*
Ga0164296_10279123	F021463	N/A	MSEALENRVVRLEVKTDNHEDDIRELRETSIDLKTTMHSIEKSLNQIKYLAIGALAVVIAQTIGLDKAIKLLFGY*